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RNA-RNA Interaction

I. RNA-RNA sequencing methods

  • ✅ [review] 2024 Molecular Cell - Technological advancements in deciphering RNA-RNA interactions
  • 2024 Nature Biotechnology - KARR-seq reveals cellular higher-order RNA structures and RNA–RNA interactions
  • ✅ [review] 2022 Current Opinion in Genetics & Development - Architecture of RNA–RNA interactions
  • ✅ 2020 Nature - RIC-seq for global in situ profiling of RNA–RNA spatial interactions.
  • 2023 Nature - Complementary Alu sequences mediate enhancer–promoter selectivity

II. RNA-RNA Interaction Prediction

  • 2022 Symmetry - Recent Deep Learning Methodology Development for RNA–RNA Interaction Prediction
  • [book] 2023 RNA Structure Prediction - Web Services for RNA-RNA Interaction Prediction
  • 2020 Nature Methods - Predicting 3D genome folding from DNA sequence with Akita
  • 2017 Bioinformatics - A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life