Interaction-seq

I. RNA-RNA

• ✅ [review] 2024 Molecular Cell - Technological advancements in deciphering RNA-RNA interactions
• ✅ 2024 Nature Biotechnology - KARR-seq reveals cellular higher-order RNA structures and RNA–RNA interactions
• 2023 Nature - Complementary Alu sequences mediate enhancer–promoter selectivity
• [review] 2022 Current Opinion in Genetics & Development - Architecture of RNA–RNA interactions
• ✅ 2020 Nature - RIC-seq for global in situ profiling of RNA–RNA spatial interactions

II. RNA-DNA+

• ✅ MUSIC-seq: 2024 Nature - Single-cell multiplex chromatin and RNA interactions in ageing human brain
• 2022 Nature Protocols - SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding
• 2017 Nature Biotech. - GRID-seq reveals the global RNA–chromatin interactome